PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000539.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 508aa    MW: 57005.5 Da    PI: 5.3858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000539.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12330378255
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r ++   Er+RR++i+++++ Lr l+P+      +K++ a+iL  A++Y+++Lq
  Itr_sc000539.1_g00008.1 330 RSKNLVTERNRRNKIKDGLFALRALVPNI-----TKMDRASILGDAIDYVRELQ 378
                              5666778*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-1745195IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000836.55E-14326382No hitNo description
SuperFamilySSF474598.77E-18327391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.031328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10330378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-17330394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-15334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00264445484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MSAGNQEGHY YYYTNCRGFW ETVFINAISV DEPIMGASET ALHWLRPLVE SKNWDYCVVW  60
RLGDDPSRFI EWVGCCCCGA YGVLCNVKKE KGVEEQDLGP LCRDVHVQHH VRTMACEALA  120
GFPSSIPLYS GIRGEVVILN EPKWLIHGYA SDSKAPDGIS GTQVLIPVAG GLIELYSSRL  180
IPKDQKTIEF VNNRFKFYVE EAMNDMAYFS MSRQQQALDL SPNECQSSWL APLHCADLPE  240
PCSNLSIQGS STGSTPASTE RLQCDSVSNL VSLSESFNQS NELFNEKLKL HCNQHPTTMK  300
SDEFSLSCVT YDIARNAIVT GQKRQRGQYR SKNLVTERNR RNKIKDGLFA LRALVPNITK  360
MDRASILGDA IDYVRELQQI VKELEDELNE IDAEDESQRI AEHVTPDLNG KSKDSEQTSK  420
KSNNVLKKAH VEVNQIDSRV FMLRFIGKHS RGGFSRLMET MDSLGLQVLD ANVTTLNEEV  480
LSIFRAEAKA DGMCNSRTLE CALVELTN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554040.11e-155PREDICTED: transcription factor bHLH90-like
TrEMBLK4BW611e-149K4BW61_SOLLC; Uncharacterized protein
STRINGSolyc05g005300.2.11e-148(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.12e-45bHLH family protein